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seqman ngen 16 software  (DNASTAR)


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    Structured Review

    DNASTAR seqman ngen 16 software
    Seqman Ngen 16 Software, supplied by DNASTAR, used in various techniques. Bioz Stars score: 97/100, based on 764 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seqman+ngen+16+software/SeqMan+NGen/pmc10425240-219-31-31
    Average 97 stars, based on 764 article reviews
    seqman ngen 16 software - by Bioz Stars, 2026-09
    97/100 stars

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    Related Articles

    Software:

    Article Title: Penicillin resistance in bovine Staphylococcus aureus: Genomic evaluation of the discrepancy between phenotypic and molecular test methods.
    Article Snippet: To enrich bla operon-specific reads of each strain in silico, total reads were first assembled against the chromosome of S. aureus NCTC 8325 (NC_007795; devoid of bla operon containing transposons) using the SeqMan NGen 16 software (default settings) included in the DNASTAR Lasergene 16 software package (DNASTAR Inc.). .. The remaining unassembled reads of the query strain (containing plasmids, transposons) were then de novo assembled with the SeqMan NGen 16 software (DNASTAR), deactivating the “repeat handling” option in the software settings, selecting a minimum match for overlapping read segments of 93%, and selecting contigs with lengths greater than 1,000 nucleotides. ..

    Article Title: Penicillin resistance in bovine Staphylococcus aureus: Genomic evaluation of the discrepancy between phenotypic and molecular test methods.
    Article Snippet: .. To enrich bla operon-specific reads of each strain in silico, total reads were first assembled against the chromosome of S. aureus NCTC 8325 (NC_007795; devoid of bla operon containing transposons) using the SeqMan NGen 16 software (default settings) included in the DNASTAR Lasergene 16 software package (DNASTAR Inc.). .. The remaining unassembled reads of the query strain (containing plasmids, transposons) were then de novo assembled with the SeqMan NGen 16 software (DNASTAR), deactivating the “repeat handling” option in the software settings, selecting a minimum match for overlapping read segments of 93%, and selecting contigs with lengths greater than 1,000 nucleotides.

    Article Title: Penicillin resistance in bovine Staphylococcus aureus: Genomic evaluation of the discrepancy between phenotypic and molecular test methods.
    Article Snippet: .. The Tn13616 transposon was subsequently used as an assembly reference to obtain the complete transposon for these 5 CC8 strains using the SeqMan NGen 16 software (DNASTAR) and a minimum match for overlapping read segments set to 99%. ..

    Article Title: Elucidation of the Bovine Intramammary Bacteriome and Resistome from healthy cows of Swiss dairy farms in the Canton Tessin
    Article Snippet: DNA samples ( n = 350) were sequenced by Eurofins Genomics GmbH (Ebersberg, Germany) on the HiSeq sequencing platform (Illumina, San Diego, CA). .. The reads were first assembled using the complete genome of the type strain of the corresponding species as reference ( Illumina and long reads sequencing (PacBio/ONT) of type strains ) using SeqMan NGen 16 software (default settings) from the DNASTAR Lasergene 16 software package (DNASTAR Inc., Madison, WI). ..

    In Silico:

    Article Title: Penicillin resistance in bovine Staphylococcus aureus: Genomic evaluation of the discrepancy between phenotypic and molecular test methods.
    Article Snippet: .. To enrich bla operon-specific reads of each strain in silico, total reads were first assembled against the chromosome of S. aureus NCTC 8325 (NC_007795; devoid of bla operon containing transposons) using the SeqMan NGen 16 software (default settings) included in the DNASTAR Lasergene 16 software package (DNASTAR Inc.). .. The remaining unassembled reads of the query strain (containing plasmids, transposons) were then de novo assembled with the SeqMan NGen 16 software (DNASTAR), deactivating the “repeat handling” option in the software settings, selecting a minimum match for overlapping read segments of 93%, and selecting contigs with lengths greater than 1,000 nucleotides.

    Sequencing:

    Article Title: Elucidation of the Bovine Intramammary Bacteriome and Resistome from healthy cows of Swiss dairy farms in the Canton Tessin
    Article Snippet: DNA samples ( n = 350) were sequenced by Eurofins Genomics GmbH (Ebersberg, Germany) on the HiSeq sequencing platform (Illumina, San Diego, CA). .. The reads were first assembled using the complete genome of the type strain of the corresponding species as reference ( Illumina and long reads sequencing (PacBio/ONT) of type strains ) using SeqMan NGen 16 software (default settings) from the DNASTAR Lasergene 16 software package (DNASTAR Inc., Madison, WI). ..



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